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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1717ChIP-seq
Assay category
  • 1803Transcription
  • 1717DNA binding
  • 780DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 883histone modification
  • 882histone
  • 502transcription factor
  • 454narrow histone mark
  • 427broad histone mark
  • 327control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 296August, 2017
  • 242October, 2019
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 11May, 2021
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1494bam
  • 1273bigWig
  • 1211bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 314tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1710Homo sapiens
Biosample type
  • 907tissue
  • 484cell line
  • 162primary cell
  • 161in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1713AMP
  • 4T1D
Genome assembly (visualization)
  • 1188hg19
  • 1182GRCh38
Lab
  • 1659AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

1717 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
pancreatic alpha cell13
pancreatic beta cell13
in vitro differentiated cells
adipocyte67
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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