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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
500
ChIP-seq
Assay category
500
DNA binding
50
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
85
control
82
recombinant protein
76
histone modification
75
histone
58
RNA binding protein
42
broad histone mark
33
narrow histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
63
December, 2017
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
5
October, 2019
Available data
458
bam
450
fastq
403
bigWig
384
bed narrowPeak
350
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
36
tagAlign
6
bed bed3+
3
tar
Organism
500
Homo sapiens
Biosample type
376
cell line
105
tissue
15
in vitro differentiated cells
4
primary cell
Organ
500
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
17
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
500
AMP
Genome assembly (visualization)
400
hg19
339
GRCh38
Lab
482
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
April, 2020
May, 2020
target.investigated_as!
other context
BIOSAMPLE
ASSAY
500 results
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Clear Filters
ChIP-seq
cell line
HepG2
376
tissue
liver
95
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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