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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1575ChIP-seq
Assay category
  • 1829Transcription
  • 1575DNA binding
  • 822DNA accessibility
  • 82DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 818histone
  • 818histone modification
  • 467transcription factor
  • 426narrow histone mark
  • 392broad histone mark
  • 285control
  • 106RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1397bam
  • 1219bigWig
  • 1193bed narrowPeak
  • 769bigBed narrowPeak
  • 676fastq
  • 313tagAlign
  • 75bed broadPeak
  • 66bigBed broadPeak
  • 20bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1575Homo sapiens
Biosample type
  • 731tissue
  • 484cell line
  • 226primary cell
  • 131in vitro differentiated cells
  • 3stem cell
Organ
  • 504liver
  • 218brain
  • 134heart
  • 124pancreas
  • 103epithelium
  • 102vasculature
  • 99blood vessel
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 36connective tissue
  • 35nerve
  • 34artery
  • 23adipose tissue
  • 22embryo
  • 20spleen
  • 17musculature of body
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1487AMP
  • 88T1D
Genome assembly (visualization)
  • 1132hg19
  • 1115GRCh38
Lab
  • 1363AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 50missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

1575 results

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Clear Filters
ChIP-seq
tissue
liver97
left cardiac atrium40
body of pancreas35
heart left ventricle35
tibial nerve35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
endothelial cell of umbilical vein17
pancreatic ductal cell13
pancreatic endocrine cell11
in vitro differentiated cells
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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