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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
Assay category
438
Transcription
214
DNA binding
145
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
149
histone
149
histone modification
78
broad histone mark
71
narrow histone mark
47
control
18
transcription factor
9
RNA binding protein
Date released
94
August, 2017
51
October, 2018
32
September, 2018
13
November, 2019
13
October, 2019
6
September, 2017
May, 2021
3
March, 2020
2
May, 2019
Available data
194
bam
158
bigWig
147
fastq
137
bed narrowPeak
59
bigBed narrowPeak
21
bed bed3+
16
tagAlign
12
bed broadPeak
Organism
207
Homo sapiens
Biosample type
117
tissue
70
primary cell
27
cell line
Organ
552
liver
218
brain
214
pancreas
141
connective tissue
129
heart
119
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
49
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
17
vein
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
211
AMP
3
T1D
Genome assembly (visualization)
160
hg19
154
GRCh38
Lab
214
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2021
June, 2019
May, 2021
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
14
Panc1
13
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