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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1706ChIP-seq
Assay category
  • 1736Transcription
  • 1706DNA binding
  • 798DNA accessibility
  • 96DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 877histone modification
  • 876histone
  • 498transcription factor
  • 450narrow histone mark
  • 425broad histone mark
  • 326control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 296August, 2017
  • 242October, 2019
  • May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1487bam
  • 1267bigWig
  • 1205bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 308tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1699Homo sapiens
Biosample type
  • 907tissue
  • 483cell line
  • 158primary cell
  • 155in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • 214pancreas
  • 153connective tissue
  • 134heart
  • 125epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1703AMP
  • 3T1D
Genome assembly (visualization)
  • 1182hg19
  • 1176GRCh38
Lab
  • 1648AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 55inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

1706 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH114
Panc113
smooth muscle cell of the coronary artery6
primary cell
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
pancreatic alpha cell13
pancreatic beta cell13
in vitro differentiated cells
adipocyte67
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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