Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1465ChIP-seq
Assay category
  • 1918Transcription
  • 1465DNA binding
  • 832DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 929histone modification
  • 928histone
  • 476narrow histone mark
  • 451broad histone mark
  • 270transcription factor
  • 264control
  • 77RNA binding protein
  • 23recombinant protein
  • 21chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • November, 2017
  • 296August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1186bam
  • 1056bigWig
  • 1012bed narrowPeak
  • 533fastq
  • 489bigBed narrowPeak
  • 320tagAlign
  • 53bed bed3+
  • 44bed broadPeak
  • 15bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 1458Homo sapiens
Biosample type
  • 825tissue
  • 270primary cell
  • 198in vitro differentiated cells
  • 169cell line
  • 3stem cell
Organ
  • 237liver
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 127brain
  • 123epithelium
  • 96blood vessel
  • 96vasculature
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1377AMP
  • 88T1D
Genome assembly (visualization)
  • 1024hg19
  • 986GRCh38
Lab
  • 1253AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 35inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

1465 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
cell line
HepG263
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego