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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
Assay category
481
Transcription
198
DNA binding
42
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
79
histone
79
histone modification
79
transcription factor
44
broad histone mark
38
control
34
narrow histone mark
18
RNA binding protein
10
chromatin remodeller
Date released
117
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
November, 2018
12
June, 2019
1
October, 2019
Available data
147
bam
135
fastq
117
bigWig
100
bed narrowPeak
57
bigBed narrowPeak
22
tagAlign
11
bed bed3+
1
bed broadPeak
Organism
198
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
45
cell line
12
primary cell
Organ
503
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
52
kidney
45
blood
45
bodily fluid
39
musculature of body
35
nerve
34
artery
22
embryo
17
vein
14
spleen
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
198
AMP
Genome assembly (visualization)
118
hg19
117
GRCh38
Lab
198
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
November, 2018
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
cell line
GM12878
45
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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