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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1858ChIP-seq
Assay category
  • 1898Transcription
  • 1858DNA binding
  • 806DNA accessibility
  • 97DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Target of assay
  • 1007histone modification
  • 1006histone
  • 513transcription factor
  • 510narrow histone mark
  • 495broad histone mark
  • 333control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 296August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1565bam
  • 1379bigWig
  • 1314bed narrowPeak
  • 857fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1851Homo sapiens
Biosample type
  • 907tissue
  • 471cell line
  • 279primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 552liver
  • 218brain
  • 205pancreas
  • 153connective tissue
  • 134heart
  • 116epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1770AMP
  • 88T1D
Genome assembly (visualization)
  • 1294hg19
  • 1255GRCh38
Lab
  • 1646AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 46inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2019
BIOSAMPLE
ASSAY

1858 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
Panc113
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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