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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
ChIP-seq
Assay category
547
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
22
August, 2021
October, 2019
Available data
505
bam
452
fastq
427
bigWig
408
bed narrowPeak
352
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
547
Homo sapiens
Biosample type
378
cell line
150
tissue
15
in vitro differentiated cells
4
primary cell
Organ
547
liver
205
pancreas
152
connective tissue
134
brain
129
heart
105
epithelium
73
adipose tissue
62
vasculature
60
blood
60
bodily fluid
59
blood vessel
39
musculature of body
31
kidney
22
embryo
20
spleen
11
artery
7
limb
3
eye
Project
547
AMP
Genome assembly (visualization)
424
hg19
355
GRCh38
Lab
529
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2019
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
547 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
140
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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