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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1629ChIP-seq
Assay category
  • 1888Transcription
  • 1629DNA binding
  • 799DNA accessibility
  • 97DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 821histone modification
  • 820histone
  • 507transcription factor
  • 446broad histone mark
  • 373narrow histone mark
  • 296control
  • 114RNA binding protein
  • 82recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 296August, 2017
  • October, 2019
  • 165May, 2021
  • 120May, 2019
  • 94December, 2017
  • 80April, 2019
  • 74October, 2018
  • 70November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 25January, 2019
  • 24February, 2018
  • 15October, 2017
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1359bam
  • 1214bigWig
  • 1151bed narrowPeak
  • 857fastq
  • 743bigBed narrowPeak
  • 349tagAlign
  • 112bed broadPeak
  • 77bigBed broadPeak
  • 53bed bed3+
  • 3tar
Organism
  • 1622Homo sapiens
Biosample type
  • 712tissue
  • 461cell line
  • 255primary cell
  • 198in vitro differentiated cells
  • 3stem cell
Organ
  • 547liver
  • 205pancreas
  • 152connective tissue
  • 134brain
  • 129heart
  • 105epithelium
  • 73adipose tissue
  • 62vasculature
  • 60blood
  • 60bodily fluid
  • 59blood vessel
  • 39musculature of body
  • 31kidney
  • 22embryo
  • 20spleen
  • 11artery
  • 7limb
  • 3eye
Project
  • 1541AMP
  • 88T1D
Genome assembly (visualization)
  • 1127hg19
  • 1090GRCh38
Lab
  • 1417AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 47inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

1629 results

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Clear Filters
ChIP-seq
tissue
liver140
islet of Langerhans50
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH115
smooth muscle cell of the coronary artery6
iPSC derived cell line2
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
skeletal muscle myoblast15
pancreatic alpha cell13
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm18
hepatocyte15
stem cell
hESC3
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