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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
Assay category
196
Transcription
116
DNA binding
96
DNA accessibility
13
3D chromatin structure
7
DNA methylation
1
DNA sequencing
Target of assay
75
transcription factor
23
histone
23
histone modification
22
RNA binding protein
18
control
16
recombinant protein
14
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
97
bam
96
bed narrowPeak
96
bigWig
70
fastq
63
bigBed narrowPeak
24
tagAlign
3
bed bed3+
Organism
116
Homo sapiens
Biosample type
79
cell line
21
in vitro differentiated cells
12
tissue
4
primary cell
Organ
71
liver
15
blood
15
bodily fluid
6
spleen
5
epithelium
3
pancreas
Project
113
AMP
3
T1D
Genome assembly (visualization)
93
hg19
82
GRCh38
Lab
98
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
January, 2018
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
cell line
HepG2
63
GM12878
15
EndoC_BH1
1
in vitro differentiated cells
neural progenitor cell
21
tissue
spleen
6
liver
4
islet of Langerhans
2
primary cell
hepatocyte
4
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