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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
Assay category
481
Transcription
170
DNA binding
37
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
93
histone
93
histone modification
53
broad histone mark
40
transcription factor
39
narrow histone mark
37
control
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
18
October, 2019
12
June, 2019
Available data
119
bam
90
fastq
87
bigWig
68
bed narrowPeak
25
bigBed narrowPeak
22
tagAlign
11
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
Organism
170
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
29
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
170
AMP
Genome assembly (visualization)
88
hg19
85
GRCh38
Lab
170
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
endothelial cell of umbilical vein
17
mesenchymal stem cell
7
cardiac fibroblast
5
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