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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
Assay category
199
Transcription
110
DNA accessibility
100
DNA binding
52
DNA methylation
8
3D chromatin structure
Target of assay
92
histone
92
histone modification
48
narrow histone mark
44
broad histone mark
control
8
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
21
October, 2019
21
September, 2018
16
December, 2017
14
August, 2017
11
November, 2019
4
May, 2019
4
November, 2017
3
August, 2021
3
May, 2021
2
June, 2019
1
March, 2020
Available data
100
bam
97
bigWig
95
bed narrowPeak
55
fastq
34
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tagAlign
3
bed bed3+
Organism
100
Homo sapiens
Biosample type
69
primary cell
18
in vitro differentiated cells
13
cell line
Organ
444
liver
190
brain
170
pancreas
118
connective tissue
114
heart
102
epithelium
80
vasculature
78
blood vessel
54
blood
54
bodily fluid
49
adipose tissue
49
limb
40
kidney
33
musculature of body
25
artery
24
nerve
15
embryo
15
vein
12
spleen
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
98
AMP
2
T1D
Genome assembly (visualization)
97
hg19
95
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
eye
target.investigated_as!
control
target.investigated_as!!
control
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
epithelial cell of proximal tubule
8
pancreatic acinar cell
8
pancreatic alpha cell
7
+ See 5 more…
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
13
See all biosamples
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