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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
Assay category
196
Transcription
121
DNA accessibility
110
DNA binding
52
DNA methylation
7
3D chromatin structure
Target of assay
78
histone
78
histone modification
42
narrow histone mark
36
broad histone mark
25
control
7
transcription factor
6
RNA binding protein
Date released
26
August, 2017
24
October, 2019
21
September, 2018
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
December, 2017
4
May, 2021
1
March, 2020
Available data
110
bam
84
bigWig
80
bed narrowPeak
57
fastq
22
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
3
tagAlign
Organism
110
Homo sapiens
Biosample type
88
primary cell
15
cell line
7
in vitro differentiated cells
Organ
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
108
AMP
2
T1D
Genome assembly (visualization)
84
hg19
80
GRCh38
Lab
110
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
liver
pericardium
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 5 more…
cell line
EndoC_BH1
15
in vitro differentiated cells
Hepatic endoderm
4
pancreatic PP cell
3
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