Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
Assay category
  • 552DNA binding
  • 193Transcription
  • 29DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 63December, 2017
  • 50May, 2020
  • 49November, 2018
  • 48August, 2017
  • 22August, 2021
  • 5October, 2019
Available data
  • 510bam
  • 452fastq
  • 432bigWig
  • 413bed narrowPeak
  • 352bigBed narrowPeak
  • 86tagAlign
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 6bed bed3+
  • 3tar
Organism
  • 552Homo sapiens
Biosample type
  • 378cell line
  • 155tissue
  • 15in vitro differentiated cells
  • 4primary cell
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 552AMP
Genome assembly (visualization)
  • 429hg19
  • 360GRCh38
Lab
  • 534AMP-T2D consortium
  • 18Bing Ren, UCSD
Audit category:
  • 27inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

552 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2378
tissue
liver145
right lobe of liver10
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego