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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 755ChIP-seq
Assay category
  • 755DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Target of assay
  • 420transcription factor
  • 261histone
  • 261histone modification
  • 153narrow histone mark
  • 108broad histone mark
  • 88recombinant protein
  • 82RNA binding protein
  • 69control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 97October, 2019
  • 62December, 2017
  • 62May, 2021
  • 61November, 2018
  • 48August, 2017
  • 27August, 2021
  • 27December, 2018
  • 23June, 2019
  • 16January, 2019
  • 14May, 2019
  • 8October, 2018
  • 6October, 2017
  • 3March, 2020
  • 2April, 2019
  • 2February, 2021
  • 2September, 2017
Available data
  • 729bam
  • 665bigWig
  • 634bed narrowPeak
  • 519fastq
  • 475bigBed narrowPeak
  • 142tagAlign
  • 79bed broadPeak
  • 79bigBed broadPeak
  • 52bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 755Homo sapiens
Biosample type
  • 416cell line
  • 151tissue
  • 119primary cell
  • 66in vitro differentiated cells
  • 3stem cell
Organ
  • 398liver
  • 56blood
  • 56bodily fluid
  • 50epithelium
  • 49brain
  • 44pancreas
  • 34vasculature
  • 32blood vessel
  • 19connective tissue
  • 17kidney
  • 16vein
  • 11heart
  • 10musculature of body
  • 7artery
  • 5limb
  • 4adipose tissue
  • 3embryo
  • 2eye
  • 1pituitary gland
Project
  • 705AMP
  • 50T1D
Genome assembly (visualization)
  • 670hg19
  • 622GRCh38
Lab
  • 696AMP-T2D consortium
  • 57Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 32inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

755 results

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Clear Filters
ChIP-seq
cell line
HepG2335
GM1287856
Panc111
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
tissue
liver42
islet of Langerhans22
brain11
body of pancreas7
thoracic aorta7
primary cell
monocyte47
endothelial cell of umbilical vein16
skeletal muscle myoblast15
skeletal muscle satellite cell8
mesenchymal stem cell7
in vitro differentiated cells
neural progenitor cell21
hepatocyte15
embryonic stem cell11
adipocyte7
Posterior foregut3
stem cell
hESC3
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