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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
WGBS
11
RRBS
1
DNAme array
1
whole genome sequencing assay
Assay category
1704
Transcription
1523
DNA binding
658
DNA accessibility
78
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
23
July, 2019
August, 2017
7
November, 2018
6
February, 2021
1
August, 2021
1
May, 2021
Available data
41
zippedFastqFolder
26
bed bedMethyl
26
bigBed bedMethyl
16
bam
15
bigWig
13
fastq
6
tsv
1
vcf
Organism
79
Homo sapiens
Biosample type
54
primary cell
23
tissue
2
cell line
Organ
53
epithelium
53
pancreas
10
heart
kidney
4
liver
3
vasculature
2
blood vessel
2
brain
2
musculature of body
2
spleen
1
connective tissue
1
eye
1
limb
1
pericardium
Project
47
HPAP
32
AMP
Genome assembly (visualization)
15
GRCh38
11
hg19
Lab
47
Klaus Kaestner, Upenn
31
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
organ_slims!
kidney
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
79 results
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WGBS
RRBS
DNAme array
whole genome sequencing assay
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 4 more…
tissue
heart left ventricle
4
1
pancreas
2
1
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 8 more…
cell line
HepG2
1
1
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