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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
17
total RNA-seq
8
WGBS
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
19
July, 2019
3
May, 2021
2
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
Available data
110
tsv
22
bam
22
bigWig
8
bed bedMethyl
8
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
117
tissue
3
primary cell
1
in vitro differentiated cells
Organ
532
pancreas
488
connective tissue
407
adipose tissue
254
epithelium
200
liver
176
heart
129
kidney
70
vasculature
blood vessel
62
bone element
58
artery
26
brain
20
eye
15
musculature of body
14
embryo
9
lung
8
limb
5
nerve
4
skeleton
2
pericardium
2
spleen
1
spinal cord
Project
121
AMP
Genome assembly (visualization)
22
GRCh38
18
hg19
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
121 results
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single cell RNA-seq
total RNA-seq
WGBS
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
4
1
heart right ventricle
17
1
2
right cardiac atrium
18
1
left cardiac atrium
18
heart
1
4
1
1
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primary cell
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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