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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
WGBS
13
RRBS
1
DNAme array
Assay category
1690
Transcription
1456
DNA binding
765
DNA accessibility
80
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
25
July, 2019
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
28
bed bedMethyl
28
bigBed bedMethyl
16
bam
15
bigWig
13
fastq
6
tsv
Organism
80
Homo sapiens
Biosample type
55
primary cell
24
tissue
1
cell line
Organ
53
pancreas
52
epithelium
9
heart
3
kidney
3
liver
3
vasculature
2
blood vessel
2
brain
2
musculature of body
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
33
AMP
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
47
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
inconsistent replicate
month_released!
August, 2017
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
80 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 5 more…
tissue
heart left ventricle
4
1
pancreas
2
1
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
cell line
HepG2
1
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