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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
WGBS
16
RRBS
1
DNAme array
Assay category
1687
DNA binding
1653
Transcription
622
DNA accessibility
92
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
22
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
31
bed bedMethyl
31
bigBed bedMethyl
21
fastq
18
bam
17
bigWig
6
tsv
Organism
92
Homo sapiens
Biosample type
54
primary cell
37
tissue
1
cell line
Organ
53
pancreas
52
epithelium
9
heart
7
liver
6
adipose tissue
6
connective tissue
6
musculature of body
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
45
AMP
Genome assembly (visualization)
17
GRCh38
14
hg19
Lab
47
Klaus Kaestner, Upenn
45
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
92 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 4 more…
tissue
heart left ventricle
4
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
+ See 12 more…
cell line
HepG2
1
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