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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
21
RRBS
1
DNAme array
Assay category
516
Transcription
482
DNA accessibility
481
DNA binding
80
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
19
July, 2019
13
August, 2017
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
21
fastq
18
bam
bigWig
6
tsv
Organism
80
Homo sapiens
Biosample type
58
primary cell
22
tissue
Organ
53
epithelium
49
pancreas
6
liver
5
connective tissue
5
musculature of body
4
adipose tissue
4
heart
4
kidney
2
brain
2
vasculature
1
blood vessel
1
eye
1
pericardium
Project
47
HPAP
33
AMP
Genome assembly (visualization)
19
hg19
Lab
47
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
ibed
tagAlign bed3+
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
80 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 8 more…
tissue
liver
3
1
skeletal muscle tissue
4
heart left ventricle
2
1
subcutaneous abdominal adipose tissue
3
adipose tissue
1
+ See 7 more…
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