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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 64WGBS
  • 21RRBS
  • 1DNAme array
Assay category
  • 1853Transcription
  • 1738DNA binding
  • 806DNA accessibility
  • 86DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 41May, 2022
  • 27July, 2019
  • 11August, 2017
  • 6November, 2018
  • 1May, 2021
Available data
  • 41zippedFastqFolder
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 15bam
  • 14bigWig
  • 10fastq
Organism
  • 86Homo sapiens
Biosample type
  • 52primary cell
  • 33tissue
  • 1cell line
Organ
  • 47epithelium
  • 46pancreas
  • 10heart
  • 6liver
  • 6musculature of body
  • 4connective tissue
  • 4kidney
  • 3adipose tissue
  • 3vasculature
  • 2blood vessel
  • 2brain
  • 2spleen
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 45AMP
  • 41HPAP
Genome assembly (visualization)
  • 19hg19
  • 14GRCh38
Lab
  • 45AMP-T2D consortium
  • 41Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
files.read_length!
  • 100
BIOSAMPLE
ASSAY

86 results

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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell25
pancreatic beta cell16
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
tissue
heart left ventricle41
skeletal muscle tissue4
liver21
subcutaneous abdominal adipose tissue3
aorta2
cell line
HepG21
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