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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 33WGBS
  • 21RRBS
  • 1DNAme array
Assay category
  • 1861DNA binding
  • 1719Transcription
  • 831DNA accessibility
  • 55DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 27July, 2019
  • 15August, 2017
  • 6February, 2021
  • 6November, 2018
  • 1May, 2021
Available data
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 20fastq
  • 17bam
  • 16bigWig
  • 6tsv
Organism
  • 55Homo sapiens
Biosample type
  • 37tissue
  • 17primary cell
  • 1cell line
Organ
  • 12epithelium
  • 11pancreas
  • 10heart
  • 7connective tissue
  • 7liver
  • 6adipose tissue
  • 6musculature of body
  • 4kidney
  • 3vasculature
  • 2blood vessel
  • 2brain
  • 2spleen
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 49AMP
  • 6HPAP
Genome assembly (visualization)
  • 19hg19
  • 16GRCh38
Lab
  • 49AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
files.read_length!
  • 101
BIOSAMPLE
ASSAY

55 results

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WGBS
RRBS
DNAme array
tissue
heart left ventricle41
liver31
skeletal muscle tissue4
adipose tissue3
subcutaneous abdominal adipose tissue3
primary cell
pancreatic alpha cell6
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
cell line
HepG21
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