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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69WGBS
  • 17RRBS
  • 1DNAme array
Assay category
  • 1709Transcription
  • 1175DNA binding
  • 826DNA accessibility
  • 87DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 41May, 2022
  • 27July, 2019
  • 7August, 2017
  • 6February, 2021
  • 5November, 2018
  • 1May, 2021
Available data
  • 41zippedFastqFolder
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 14bam
  • 13bigWig
  • 11fastq
  • 6tsv
Organism
  • 87Homo sapiens
Biosample type
  • 57primary cell
  • 29tissue
  • 1cell line
Organ
  • 53epithelium
  • 51pancreas
  • 10heart
  • 5liver
  • 4connective tissue
  • 4kidney
  • 4musculature of body
  • 3adipose tissue
  • 3vasculature
  • 2blood vessel
  • 2brain
  • 2spleen
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 47HPAP
  • 40AMP
Genome assembly (visualization)
  • 15hg19
  • 13GRCh38
Lab
  • 47Klaus Kaestner, Upenn
  • 40AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

87 results

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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell31
pancreatic beta cell16
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
tissue
heart left ventricle41
subcutaneous abdominal adipose tissue3
aorta2
body of pancreas2
heart right ventricle2
cell line
HepG21
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