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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75WGBS
  • 21RRBS
  • 1DNAme array
Assay category
  • 1918Transcription
  • 1871DNA binding
  • 832DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 41May, 2022
  • 27July, 2019
  • 15August, 2017
  • 7November, 2018
  • 6February, 2021
  • 1May, 2021
Available data
  • 41zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21fastq
  • 18bam
  • 17bigWig
  • 6tsv
Organism
  • 97Homo sapiens
Biosample type
  • 58primary cell
  • 38tissue
  • 1cell line
Organ
  • 53epithelium
  • 53pancreas
  • 10heart
  • 7connective tissue
  • 7liver
  • 6adipose tissue
  • 6musculature of body
  • 4kidney
  • 3vasculature
  • 2blood vessel
  • 2brain
  • 2spleen
  • 1eye
  • 1limb
  • 1pericardium
Project
  • 50AMP
  • 47HPAP
Genome assembly (visualization)
  • 19hg19
  • 17GRCh38
Lab
  • 50AMP-T2D consortium
  • 47Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
type!
  • Biosample
BIOSAMPLE
ASSAY

97 results

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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell31
pancreatic beta cell16
cardiac fibroblast1
cardiac muscle cell1
choroid plexus epithelial cell1
epithelial cell of proximal tubule1
hepatocyte1
kidney epithelial cell1
monocyte1
renal cortical epithelial cell1
retinal pigment epithelial cell1
skeletal muscle cell1
skeletal muscle myoblast1
tissue
heart left ventricle41
liver31
skeletal muscle tissue4
adipose tissue3
pancreas21
subcutaneous abdominal adipose tissue3
aorta2
body of pancreas2
heart right ventricle2
spleen2
brain1
heart1
islet of Langerhans1
kidney1
muscle of leg1
pericardium1
right cardiac atrium1
right lobe of liver1
cell line
HepG21
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