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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
179
single cell RNA-seq
16
small RNA-seq
Assay category
1200
Transcription
907
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Date released
450
February, 2021
156
August, 2021
143
May, 2020
120
July, 2018
89
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
14
February, 2023
9
April, 2020
9
March, 2020
6
April, 2018
4
May, 2023
1
December, 2019
Available data
1050
tsv
917
bam
917
bigWig
97
fastq
66
txt
6
csv
Organism
1200
Homo sapiens
Biosample type
1200
tissue
403
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
457
connective tissue
399
adipose tissue
285
pancreas
154
liver
115
kidney
109
heart
62
bone element
21
brain
19
eye
13
blood vessel
13
vasculature
9
lung
7
limb
6
musculature of body
5
nerve
4
artery
4
skeleton
2
epithelium
1
spinal cord
Project
1137
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
918
GRCh38
918
hg19
Lab
1077
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
9
Xin Sun, UCSD
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
5
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
ibed
month_released!
May, 2022
BIOSAMPLE
ASSAY
1200 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
286
6
liver
147
1
1
kidney
49
64
bone tissue
58
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