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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
single cell RNA-seq
123
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1871
DNA binding
DNA accessibility
284
Transcription
91
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
February, 2023
60
May, 2022
57
August, 2021
56
September, 2020
47
September, 2023
14
October, 2019
13
February, 2021
9
April, 2020
9
May, 2021
4
July, 2018
4
March, 2023
4
May, 2023
2
March, 2020
2
May, 2020
1
December, 2019
1
November, 2018
1
September, 2018
Available data
tsv
1406
bam
1402
bigWig
295
fastq
68
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
280
Homo sapiens
Biosample type
167
tissue
108
primary cell
5
in vitro differentiated cells
2
cell line
2
stem cell
Organ
108
kidney
29
pancreas
21
liver
16
epithelium
14
eye
9
lung
1
adipose tissue
1
connective tissue
1
musculature of body
Project
121
AMP
101
HPAP
47
KPMP
9
LungMap
4
community
2
T1D
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
101
Klaus Kaestner, Upenn
60
Katalin Susztak, Upenn
47
KPMP
29
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
assay_slims!
DNA accessibility
files.file_type!
tsv
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
February, 2023
BIOSAMPLE
ASSAY
284 results
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Clear Filters
single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
59
49
islet of Langerhans
26
liver
1
20
lung
9
adipose tissue
1
+ See 2 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
15
CD8-positive, alpha-beta T cell
2
pancreatic cell
2
monocyte
1
+ See 3 more…
in vitro differentiated cells
embryonic stem cell
5
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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