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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
total RNA-seq
43
single cell RNA-seq
2
small RNA-seq
Assay category
322
Transcription
DNA accessibility
145
DNA binding
53
DNA methylation
9
3D chromatin structure
Date released
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
259
bam
255
tsv
253
bigWig
214
fastq
6
txt
Organism
322
Homo sapiens
Biosample type
171
tissue
118
primary cell
33
cell line
Organ
479
connective tissue
401
adipose tissue
322
pancreas
193
liver
168
epithelium
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
260
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
253
GRCh38
253
hg19
Lab
256
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
322 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
158
6
body of pancreas
3
2
pancreas
2
primary cell
pancreatic alpha cell
52
5
pancreatic beta cell
21
3
pancreatic acinar cell
4
7
pancreatic ductal cell
4
7
pancreatic delta cell
7
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cell line
EndoC_BH1
33
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