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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
9
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
69
Transcription
31
DNA accessibility
DNA binding
Date released
47
September, 2023
9
April, 2020
5
February, 2023
4
March, 2020
4
March, 2023
Available data
2
bam
2
bigWig
2
tsv
Organism
65
Homo sapiens
Biosample type
primary cell
63
tissue
4
cell line
2
stem cell
Organ
47
kidney
9
lung
9
pancreas
2
epithelium
Project
AMP
47
KPMP
9
LungMap
9
T1D
4
community
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
47
KPMP
9
Xin Sun, UCSD
5
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
award.project!
AMP
biosample_type!
primary cell
month_released!
February, 2020
BIOSAMPLE
ASSAY
69 results
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single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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