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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
single cell RNA-seq
59
total RNA-seq
2
small RNA-seq
Assay category
183
DNA accessibility
163
Transcription
117
DNA binding
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
27
September, 2018
18
July, 2019
5
December, 2019
4
May, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
May, 2020
2
October, 2018
2
October, 2019
1
February, 2021
1
November, 2018
Available data
158
bigWig
156
bam
156
tsv
122
fastq
2
bed bed3+
2
csv
Organism
163
Homo sapiens
Biosample type
1164
tissue
163
primary cell
138
in vitro differentiated cells
111
cell line
Organ
110
epithelium
102
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
163
AMP
96
T1D
Genome assembly (visualization)
158
hg19
156
GRCh38
Lab
161
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
assay_slims!
DNA methylation
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
total RNA-seq
small RNA-seq
primary cell
pancreatic alpha cell
12
10
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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