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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
71
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1592
DNA binding
361
DNA accessibility
190
Transcription
39
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Date released
57
August, 2021
47
September, 2023
27
May, 2022
14
February, 2023
14
October, 2019
9
April, 2020
6
May, 2021
4
July, 2018
4
March, 2023
4
May, 2023
2
March, 2020
1
December, 2019
1
February, 2021
Available data
tsv
1154
bam
1148
bigWig
123
fastq
72
txt
6
csv
Organism
186
Homo sapiens
Biosample type
primary cell
177
tissue
9
in vitro differentiated cells
2
cell line
2
stem cell
Organ
108
kidney
21
liver
18
pancreas
14
eye
9
lung
5
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
heart
1
musculature of body
Project
123
AMP
47
KPMP
9
LungMap
7
T1D
4
community
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
60
Katalin Susztak, Upenn
47
KPMP
33
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_title!
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
biosample_type!
primary cell
files.file_type!
tsv
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
49
59
islet of Langerhans
31
liver
20
1
lung
9
acetabular part of hip bone
1
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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