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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
140
single cell RNA-seq
Assay category
857
DNA binding
377
Transcription
102
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
89
August, 2017
76
February, 2023
50
July, 2018
44
April, 2018
38
September, 2020
27
September, 2018
18
February, 2021
15
February, 2018
6
May, 2022
5
January, 2019
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
1544
tsv
1406
bam
1402
bigWig
371
fastq
72
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
377
Homo sapiens
Biosample type
248
primary cell
109
tissue
15
in vitro differentiated cells
5
cell line
Organ
253
pancreas
147
epithelium
6
liver
5
kidney
4
embryo
3
connective tissue
Project
251
AMP
126
HPAP
Genome assembly (visualization)
237
GRCh38
237
hg19
Lab
245
AMP-T2D consortium
126
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
BIOSAMPLE
ASSAY
377 results
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total RNA-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
52
12
exocrine cell
39
Langerhans cell
34
pancreatic beta cell
21
12
pancreatic acinar cell
4
9
+ See 13 more…
tissue
islet of Langerhans
97
6
kidney
5
liver
1
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
5
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