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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
94
single cell RNA-seq
1
CRISPR RNA-seq
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
334
Transcription
212
DNA binding
189
DNA accessibility
47
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Date released
81
February, 2023
59
May, 2021
59
May, 2022
56
September, 2020
45
May, 2020
12
February, 2021
10
August, 2021
9
April, 2020
3
March, 2023
Available data
132
fastq
106
tsv
102
bam
98
bigWig
52
zippedFastqFolder
6
txt
2
bed bed3+
Organism
331
Homo sapiens
Biosample type
275
primary cell
42
tissue
11
cell line
5
in vitro differentiated cells
1
stem cell
Organ
kidney
66
pancreas
53
epithelium
29
liver
9
lung
Project
177
HPAP
101
T1D
44
AMP
9
LungMap
3
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
177
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
3
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
assay_title!
CRISPRi RNA-seq
files.file_type!
bedpe
lab.title!
AMP-T2D consortium
organ_slims!
kidney
BIOSAMPLE
ASSAY
334 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
liver
20
islet of Langerhans
12
lung
9
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
See all biosamples
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