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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
154
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
442
DNA binding
302
DNA accessibility
158
Transcription
23
3D chromatin structure
22
DNA methylation
1
DNA sequencing
Date released
59
August, 2021
26
May, 2022
25
February, 2020
17
February, 2023
14
October, 2019
6
May, 2021
4
July, 2018
4
March, 2023
2
March, 2020
1
May, 2023
Available data
1181
tsv
1148
bam
bigWig
117
fastq
59
txt
Organism
154
Homo sapiens
Biosample type
136
tissue
primary cell
11
cell line
9
in vitro differentiated cells
2
stem cell
Organ
49
kidney
30
liver
20
pancreas
19
eye
12
brain
7
connective tissue
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
epithelium
2
musculature of body
1
nerve
1
spinal cord
Project
147
AMP
7
T1D
4
community
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
58
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
4
Anna Gloyn, Oxford
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
primary cell
files.file_type!
bigWig
month_released!
November, 2018
BIOSAMPLE
ASSAY
158 results
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Clear Filters
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
49
islet of Langerhans
32
liver
20
retina
3
pigmented layer of retina
2
+ See 30 more…
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
stem cell
SB Ad3.1
1
1
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