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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
141
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
297
Transcription
136
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Date released
81
February, 2023
56
September, 2020
51
May, 2021
47
September, 2023
May, 2020
33
May, 2022
12
February, 2021
9
April, 2020
4
March, 2020
4
March, 2023
Available data
126
fastq
53
bam
53
bigWig
53
tsv
52
zippedFastqFolder
Organism
293
Homo sapiens
Biosample type
228
primary cell
63
tissue
4
cell line
2
stem cell
Organ
62
pancreas
55
epithelium
47
kidney
9
lung
Project
AMP
177
HPAP
60
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
177
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_title!
small RNA-seq
award.project!
AMP
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
May, 2020
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
51
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
kidney
47
lung
9
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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