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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
171
total RNA-seq
small RNA-seq
Assay category
358
Transcription
279
DNA binding
276
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
16
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
252
bigWig
250
bam
250
tsv
172
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
358
Homo sapiens
Biosample type
1197
tissue
358
primary cell
134
in vitro differentiated cells
115
cell line
2
stem cell
Organ
126
epithelium
118
pancreas
14
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
161
AMP
101
HPAP
96
T1D
Genome assembly (visualization)
252
hg19
250
GRCh38
Lab
159
AMP-T2D consortium
101
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
358 results
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single cell RNA-seq
total RNA-seq
primary cell
Langerhans cell
85
monocyte
54
pancreatic alpha cell
12
25
pancreatic beta cell
12
11
pancreatic acinar cell
12
4
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