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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
total RNA-seq
80
single cell RNA-seq
2
small RNA-seq
Assay category
459
Transcription
205
DNA binding
142
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Date released
157
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
39
April, 2018
26
February, 2021
26
September, 2018
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
392
bam
388
tsv
386
bigWig
253
fastq
6
txt
Organism
459
Homo sapiens
Biosample type
272
tissue
155
primary cell
32
cell line
Organ
481
connective tissue
459
pancreas
401
adipose tissue
200
epithelium
193
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
397
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
386
GRCh38
386
hg19
Lab
393
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
assay_title!
snATAC-seq
month_released!
November, 2019
BIOSAMPLE
ASSAY
459 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
259
6
body of pancreas
3
2
pancreas
2
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
32
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