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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 369single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1871DNA binding
  • 832DNA accessibility
  • 391Transcription
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 106August, 2021
  • 49April, 2018
  • 48July, 2018
  • 47September, 2023
  • 40September, 2020
  • 34May, 2022
  • 21July, 2019
  • 18February, 2021
  • 9April, 2020
  • 4March, 2023
  • 3August, 2018
  • 3December, 2019
  • 3June, 2018
  • 3May, 2023
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 229tsv
  • 134fastq
  • 124bam
  • 124bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 387Homo sapiens
Biosample type
  • 196tissue
  • 189primary cell
  • 2cell line
  • 2in vitro differentiated cells
  • 2stem cell
Organ
  • 94heart
  • 82pancreas
  • 70epithelium
  • 65kidney
  • 9lung
  • 7brain
  • 7connective tissue
  • 6blood vessel
  • 6vasculature
  • 4liver
  • 3adipose tissue
  • 3musculature of body
  • 2artery
Project
  • 246AMP
  • 85HPAP
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 124GRCh38
  • 124hg19
Lab
  • 235AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 47KPMP
  • 11Katalin Susztak, Upenn
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 9inconsistent ontology term
  • 7audit script error
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

391 results

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Clear Filters
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney64
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
cell line
EndoC-BH111
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
stem cell
SB Ad3.111
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