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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 566DNA binding
  • 515Transcription
  • 380DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Date released
  • 165August, 2021
  • 94February, 2023
  • 60May, 2022
  • 56September, 2020
  • 47September, 2023
  • 25February, 2020
  • 18February, 2021
  • 14October, 2019
  • 9April, 2020
  • 7May, 2021
  • 4July, 2018
  • 4March, 2023
  • 3December, 2019
  • 3May, 2023
  • 2March, 2020
  • 2May, 2020
  • 1November, 2018
  • 1September, 2018
Available data
  • 144tsv
  • 134fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 6bam
Organism
  • 511Homo sapiens
Biosample type
  • 309tissue
  • 182primary cell
  • 11cell line
  • 11in vitro differentiated cells
  • 2stem cell
Organ
  • 113kidney
  • 96heart
  • 73pancreas
  • 55epithelium
  • 31liver
  • 19eye
  • 12brain
  • 9blood vessel
  • 9lung
  • 9vasculature
  • 6connective tissue
  • 4artery
  • 4bone element
  • 4skeleton
  • 3limb
  • 3musculature of body
  • 2adipose tissue
  • 1nerve
  • 1spinal cord
Project
  • 271AMP
  • 177HPAP
  • 47KPMP
  • 9LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • hg19
  • 1401GRCh38
Lab
  • 177Klaus Kaestner, Upenn
  • 171AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 17Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 7audit script error
  • 5inconsistent ontology term
assembly!
  • hg19
BIOSAMPLE
ASSAY

515 results

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Clear Filters
single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney6449
islet of Langerhans32
liver120
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
lung9
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
retina3
cardiac atrium2
cardiac ventricle2
interventricular septum2
pigmented layer of retina2
pulmonary artery2
Ammon's horn1
C1 segment of cervical spinal cord1
acetabular part of hip bone1
amygdala1
anterior cingulate cortex1
ascending aorta1
body of pancreas1
caudate nucleus1
cerebellum1
cerebellum (Hemisphere)1
coronary artery1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))1
frontal cortex1
gastrocnemius medialis1
heart1
hypothalamus1
ilium1
ischium1
left ventricle myocardium1
nucleus accumbens1
omental fat pad1
pancreas1
pubis1
putamen1
right atrium auricular region1
right lobe of liver1
skeletal muscle tissue1
subcutaneous adipose tissue1
substantia nigra1
tibial artery1
tibial nerve1
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
pancreatic cell2
monocyte1
naive thymus-derived CD4-positive, alpha-beta T cell1
neutrophil1
cell line
HepG29
EndoC-BH111
in vitro differentiated cells
embryonic stem cell5
cardiomyocytes (cardiac muscle cell)2
immature adipocyte2
adipocyte1
preadipocyte1
stem cell
SB Ad3.111
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