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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
102
single cell RNA-seq
2
small RNA-seq
Assay category
264
DNA binding
253
Transcription
179
DNA accessibility
8
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
27
September, 2018
14
July, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
February, 2021
1
November, 2018
Available data
248
bigWig
246
bam
246
tsv
122
fastq
2
bed bed3+
2
csv
Organism
253
Homo sapiens
Biosample type
1112
tissue
253
primary cell
138
in vitro differentiated cells
111
cell line
2
stem cell
Organ
110
epithelium
102
pancreas
15
connective tissue
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
HPAP
157
AMP
96
T1D
Genome assembly (visualization)
248
hg19
246
GRCh38
Lab
155
AMP-T2D consortium
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
audit.ERROR.category!
inconsistent control
award.project!
HPAP
organ_slims!
kidney
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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