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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
184
single cell RNA-seq
2
small RNA-seq
Assay category
427
Transcription
276
DNA accessibility
264
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
27
September, 2018
14
July, 2019
13
February, 2021
5
December, 2019
4
November, 2020
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
245
bigWig
245
fastq
243
bam
243
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
427
Homo sapiens
Biosample type
1112
tissue
427
primary cell
138
in vitro differentiated cells
111
cell line
2
stem cell
Organ
160
epithelium
152
pancreas
15
connective tissue
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
154
AMP
96
T1D
Genome assembly (visualization)
245
hg19
243
GRCh38
Lab
177
Klaus Kaestner, Upenn
152
AMP-T2D consortium
98
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
audit.ERROR.category!
inconsistent control
month_released!
August, 2018
organ_slims!
kidney
BIOSAMPLE
ASSAY
427 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
10
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
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