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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
total RNA-seq
180
single cell RNA-seq
2
small RNA-seq
Assay category
421
Transcription
271
DNA accessibility
252
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
76
February, 2023
56
September, 2020
55
May, 2021
43
April, 2018
43
May, 2020
42
July, 2018
33
May, 2022
27
September, 2018
18
July, 2019
13
February, 2021
5
December, 2019
November, 2020
3
August, 2018
2
June, 2018
2
October, 2018
2
October, 2019
1
November, 2018
Available data
241
fastq
239
bigWig
237
bam
237
tsv
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
421
Homo sapiens
Biosample type
1226
tissue
421
primary cell
79
cell line
47
in vitro differentiated cells
2
stem cell
Organ
162
epithelium
150
pancreas
11
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
177
HPAP
152
AMP
92
T1D
Genome assembly (visualization)
239
hg19
237
GRCh38
Lab
177
Klaus Kaestner, Upenn
150
AMP-T2D consortium
94
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
month_released!
May, 2019
November, 2020
BIOSAMPLE
ASSAY
421 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
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