Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
total RNA-seq
119
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
379
Transcription
212
DNA binding
167
DNA accessibility
8
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Date released
81
February, 2023
67
August, 2021
59
May, 2021
May, 2022
56
September, 2020
47
September, 2023
41
May, 2020
12
February, 2021
9
April, 2020
4
March, 2023
3
May, 2023
Available data
126
fastq
102
tsv
94
bigWig
92
bam
57
txt
19
zippedFastqFolder
2
bed bed3+
Organism
375
Homo sapiens
Biosample type
238
primary cell
123
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
107
kidney
60
pancreas
53
epithelium
9
liver
9
lung
Project
144
HPAP
97
T1D
78
AMP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
94
hg19
92
GRCh38
Lab
AMP-T2D consortium
144
Klaus Kaestner, Upenn
105
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
lab.title!
AMP-T2D consortium
Struan F.A. Grant, CHOP
month_released!
May, 2022
BIOSAMPLE
ASSAY
379 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
Langerhans cell
52
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 22 more…
tissue
kidney
49
58
lung
9
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
See all biosamples
Download