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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
18
single cell RNA-seq
Assay category
485
Transcription
32
DNA accessibility
6
DNA methylation
Date released
485
February, 2021
190
May, 2020
178
May, 2021
168
July, 2018
163
August, 2021
90
February, 2023
89
August, 2017
65
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
27
September, 2018
26
October, 2019
25
February, 2020
19
November, 2019
15
February, 2018
11
March, 2020
9
April, 2020
8
December, 2019
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
March, 2023
2
October, 2018
1
November, 2018
Available data
472
tsv
467
bam
467
bigWig
12
fastq
6
csv
5
txt
Organism
485
Homo sapiens
Biosample type
450
tissue
cell line
22
in vitro differentiated cells
13
primary cell
Organ
449
connective tissue
386
adipose tissue
58
bone element
5
kidney
1
liver
Project
473
AMP
12
HPAP
Genome assembly (visualization)
467
GRCh38
467
hg19
Lab
473
AMP-T2D consortium
12
Klaus Kaestner, Upenn
Audit category:
18
inconsistent ontology term
5
audit script error
audit.WARNING.category!
inconsistent assembly
biosample_type!
cell line
organ_slims!
skeleton
BIOSAMPLE
ASSAY
485 results
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total RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
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in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
primary cell
Langerhans cell
12
osteoblast
1
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