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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
279
Transcription
105
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Date released
76
February, 2023
56
September, 2020
51
May, 2021
45
May, 2020
33
May, 2022
12
February, 2021
4
March, 2023
2
March, 2020
Available data
126
fastq
98
bam
98
bigWig
98
tsv
52
zippedFastqFolder
Organism
275
Homo sapiens
Biosample type
273
primary cell
tissue
4
cell line
2
stem cell
Organ
55
epithelium
55
pancreas
Project
AMP
177
HPAP
98
T1D
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
177
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
award.project!
AMP
biosample_type!
tissue
files.file_type!
ibed
organ_slims!
embryo
BIOSAMPLE
ASSAY
279 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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