Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1330total RNA-seq
  • 228single cell RNA-seq
  • 18small RNA-seq
Assay category
  • 1783DNA binding
  • 1576Transcription
  • 696DNA accessibility
  • 50DNA methylation
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 551February, 2021
  • 180August, 2021
  • 168July, 2018
  • 145May, 2020
  • 131May, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 30October, 2019
  • 27May, 2022
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 13February, 2023
  • 11March, 2020
  • 8December, 2019
  • 5January, 2019
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1446tsv
  • 1308bam
  • 1304bigWig
  • 245fastq
  • 72txt
  • 8csv
  • 2bed bed3+
Organism
  • 1576Homo sapiens
Biosample type
  • 1164tissue
  • 163primary cell
  • 138in vitro differentiated cells
  • 111cell line
Organ
  • 481connective tissue
  • 417pancreas
  • 401adipose tissue
  • 193liver
  • 166heart
  • 146epithelium
  • 78kidney
  • 67blood vessel
  • 67vasculature
  • 62bone element
  • 58artery
  • 24brain
  • 19eye
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1576AMP
  • 177HPAP
  • 105T1D
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1305hg19
  • 1303GRCh38
Lab
  • 1472AMP-T2D consortium
  • 60Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 14Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
Audit category:
  • 133inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

1576 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue382
islet of Langerhans2856
liver16711
kidney4917
bone tissue58
primary cell
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH131
HepG214
H1-hESC8
early embryonic cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego