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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
total RNA-seq
152
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
412
Transcription
224
DNA accessibility
106
DNA binding
47
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Date released
81
February, 2023
67
August, 2021
56
September, 2020
51
May, 2021
47
September, 2023
45
May, 2020
33
May, 2022
12
February, 2021
9
April, 2020
4
March, 2020
4
March, 2023
3
May, 2023
Available data
126
fastq
108
tsv
98
bam
98
bigWig
57
txt
52
zippedFastqFolder
Organism
408
Homo sapiens
Biosample type
273
primary cell
124
tissue
13
cell line
2
stem cell
Organ
107
kidney
63
pancreas
55
epithelium
9
liver
9
lung
Project
177
HPAP
105
T1D
70
AMP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
177
Klaus Kaestner, Upenn
101
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
6
inconsistent ontology term
award.rfa!
AMP
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
49
58
lung
9
islet of Langerhans
8
cell line
HepG2
9
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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