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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 412Transcription
  • 224DNA accessibility
  • 106DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Date released
  • 81February, 2023
  • 67August, 2021
  • 56September, 2020
  • 51May, 2021
  • 47September, 2023
  • 45May, 2020
  • 33May, 2022
  • 12February, 2021
  • 9April, 2020
  • 4March, 2020
  • 4March, 2023
  • 3May, 2023
Available data
  • 126fastq
  • 108tsv
  • 98bam
  • 98bigWig
  • 57txt
  • 52zippedFastqFolder
Organism
  • 408Homo sapiens
Biosample type
  • 273primary cell
  • 124tissue
  • 13cell line
  • 2stem cell
Organ
  • 107kidney
  • 63pancreas
  • 55epithelium
  • 9liver
  • 9lung
Project
  • 177HPAP
  • 105T1D
  • 70AMP
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 98GRCh38
  • 98hg19
Lab
  • 177Klaus Kaestner, Upenn
  • 101Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
Audit category:
  • 6inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

412 results

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Clear Filters
total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell85
monocyte53
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
tissue
kidney4958
lung9
islet of Langerhans8
cell line
HepG29
EndoC-BH111
EndoC_BH12
stem cell
SB Ad3.111
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