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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1274
total RNA-seq
367
single cell RNA-seq
18
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
Assay category
1661
Transcription
1189
DNA binding
746
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
3
control
Date released
463
February, 2021
190
May, 2020
168
July, 2018
156
August, 2021
94
May, 2021
89
August, 2017
86
February, 2023
65
July, 2019
60
May, 2022
56
September, 2020
49
April, 2018
47
September, 2023
27
September, 2018
25
February, 2020
24
October, 2019
19
November, 2019
9
April, 2020
9
March, 2020
6
December, 2019
4
May, 2023
4
November, 2020
3
August, 2018
3
June, 2018
2
March, 2023
2
October, 2018
1
November, 2018
Available data
1302
tsv
1175
bam
1171
bigWig
351
fastq
68
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
1659
Homo sapiens
Biosample type
1223
tissue
436
primary cell
in vitro differentiated cells
cell line
2
stem cell
Organ
472
connective tissue
446
pancreas
401
adipose tissue
179
liver
165
epithelium
121
kidney
113
heart
62
bone element
24
brain
19
eye
15
blood vessel
15
vasculature
9
lung
9
musculature of body
7
limb
6
artery
5
nerve
skeleton
1
pericardium
1
spinal cord
Project
1323
AMP
177
HPAP
103
T1D
47
KPMP
9
LungMap
2
community
Genome assembly (visualization)
1172
hg19
1170
GRCh38
Lab
1235
AMP-T2D consortium
177
Klaus Kaestner, Upenn
110
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
2
Anna Gloyn, Oxford
1
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
5
audit script error
biosample_type!
cell line
in vitro differentiated cells
organ_slims!
skeleton
BIOSAMPLE
ASSAY
1661 results
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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
6
liver
167
1
1
kidney
49
64
bone tissue
58
+ See 52 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
52
12
monocyte
54
exocrine cell
39
pancreatic beta cell
21
12
+ See 60 more…
stem cell
SB Ad3.1
1
1
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