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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 369single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
Assay category
  • 1803Transcription
  • 1387DNA binding
  • 801DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Target of assay
  • 3control
Date released
  • 485February, 2021
  • 190May, 2020
  • 178May, 2021
  • 168July, 2018
  • 163August, 2021
  • 94February, 2023
  • 89August, 2017
  • 65July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 19November, 2019
  • 15February, 2018
  • 11March, 2020
  • 9April, 2020
  • 8December, 2019
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2March, 2023
  • 2October, 2018
  • 1November, 2018
Available data
  • 1431tsv
  • 1302bam
  • 1298bigWig
  • 366fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1801Homo sapiens
Biosample type
  • 1227tissue
  • 436primary cell
  • 138in vitro differentiated cells
  • cell line
  • 2stem cell
Organ
  • 481connective tissue
  • 446pancreas
  • 401adipose tissue
  • 179liver
  • 167epithelium
  • 121kidney
  • 114heart
  • 62bone element
  • 24brain
  • 19eye
  • 15blood vessel
  • 15vasculature
  • 9lung
  • 9musculature of body
  • 7limb
  • 6artery
  • 6embryo
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1465AMP
  • 177HPAP
  • 103T1D
  • 47KPMP
  • 9LungMap
  • 2community
Genome assembly (visualization)
  • 1299hg19
  • 1297GRCh38
Lab
  • 1372AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 115Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 2Anna Gloyn, Oxford
  • 1Bing Ren, UCSD
Audit category:
  • 103inconsistent ontology term
  • 7audit script error
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

1803 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
tissue
adipose tissue382
islet of Langerhans2926
liver16711
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
stem cell
SB Ad3.111
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