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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1391total RNA-seq
  • 367single cell RNA-seq
  • 18small RNA-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1780Transcription
  • 1673DNA binding
  • 790DNA accessibility
  • 97DNA methylation
  • 303D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 541February, 2021
  • 190May, 2020
  • 173August, 2021
  • 168July, 2018
  • 98May, 2021
  • 90February, 2023
  • 89August, 2017
  • 65July, 2019
  • 60May, 2022
  • 56September, 2020
  • 49April, 2018
  • 47September, 2023
  • 28October, 2019
  • 27September, 2018
  • 25February, 2020
  • 20November, 2019
  • 13March, 2020
  • 9April, 2020
  • 6December, 2019
  • 5January, 2019
  • 4March, 2023
  • 4May, 2023
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 1415tsv
  • 1279bam
  • 1275bigWig
  • 356fastq
  • 72txt
  • 52zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1776Homo sapiens
Biosample type
  • 1227tissue
  • 436primary cell
  • in vitro differentiated cells
  • 115cell line
  • 2stem cell
Organ
  • 479pancreas
  • 472connective tissue
  • 401adipose tissue
  • 199epithelium
  • 193liver
  • 165heart
  • 125kidney
  • 67blood vessel
  • 67vasculature
  • 62bone element
  • 58artery
  • 24brain
  • 19eye
  • 9lung
  • 9musculature of body
  • 8embryo
  • 7limb
  • 5nerve
  • 4skeleton
  • 1pericardium
  • 1spinal cord
Project
  • 1438AMP
  • 177HPAP
  • 105T1D
  • 47KPMP
  • 9LungMap
  • 4community
Genome assembly (visualization)
  • 1276hg19
  • 1274GRCh38
Lab
  • 1343AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 110Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 48inconsistent ontology term
  • 5audit script error
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

1780 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
adipose tissue382
islet of Langerhans2926
liver16711
kidney4964
bone tissue58
primary cell
Langerhans cell85
pancreatic alpha cell5212
monocyte54
exocrine cell39
pancreatic beta cell2112
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133
HepG214
H1-hESC8
EndoC-BH111
stem cell
SB Ad3.111
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